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OpenMed-PII-BioClinicalModern-Large-395M-v1

Detects 54 personal identifier types in English clinical and biomedical text

De-identify text (PII/PHI)Personal identifiers (PII/PHI)EnglishMedium · 396Mapache-2.0

What it does

This model detects personal identifiers in English clinical and biomedical text, covering 54 entity types such as names, dates, phone numbers, and medical record numbers. It reports an F1 score of 0.961 on a stratified 2,000-sample test set from NVIDIA Nemotron-PII, with a 396M-parameter ModernBERT backbone.

Best for

  • De-identifying clinical notes
  • Redacting patient records
  • Anonymizing biomedical research data

What it detects (54 labels)

  • Account number
  • Age
  • API key
  • Bank routing number
  • Biometric identifier
  • Blood type
  • Certificate license number
  • City
  • Company name
  • Coordinate
  • Country
  • County
  • Credit debit card
  • Customer ID
  • Card CVV
  • Date
  • Date of birth
  • Date time
  • Device identifier
  • Education level
  • Email
  • Employee ID
  • Employment status
  • Fax number
  • First name
  • Gender
  • Health plan beneficiary number
  • HTTP cookie
  • IPv4 address
  • IPv6 address
  • Language
  • Last name
  • License plate
  • MAC address
  • Medical record number
  • Occupation
  • Password
  • Phone number
  • PIN
  • Political view
  • Postcode
  • Race ethnicity
  • Religious belief
  • Sexuality
  • Social security number
  • State
  • Street address
  • SWIFT/BIC code
  • Tax ID
  • Time
  • Unique ID
  • URL
  • Username
  • Vehicle identifier

Quality

Benchmark nvidia/Nemotron-PII (test_strat) · all models on this benchmark
F10.961
Precision0.966
Recall0.957
Accuracy0.995
SourceReported by the authors (test_results.json in the repository)

Use it

pip install transformers torch

from transformers import pipeline
ner = pipeline("token-classification", model="OpenMed/OpenMed-PII-BioClinicalModern-Large-395M-v1", aggregation_strategy="simple")
print(ner("Patient prescribed 10 mg aspirin for hypertension."))
Android, browser, CPU (ONNX) build
pip install --upgrade "openmed[onnx-runtime]"

from openmed import OnnxModel
model = OnnxModel.from_pretrained("OpenMed/OpenMed-PII-BioClinicalModern-Large-395M-v1-onnx-android")
for entity in model("The patient started imatinib after the consultation."):
    print(entity.to_dict())
Limitations stated in the model card

⚠️ Important: This model is intended as an assistive tool, not a replacement for human review. - False Negatives: Some PII may not be detected; always verify critical applications - Context Sensitivity: Performance may vary with domain-specific terminology - Challenging Categories: `occupation`, `time`, and `sexuality` have lower F1 scores - Language: Primarily trained on English text

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